tobac
v1.4.2
Basic Information
Installation
Data input
Analysis
Plotting
Handling Large Datasets
Example notebooks
Refereed Publications
Feature Detection
Feature Detection Basics
Threshold Feature Detection Parameters
Feature Detection Parameter Examples
Feature Detection Output
Segmentation
Segmentation
Watershedding Segmentation Parameters
Segmentation Output
Features without segmented areas
Tracking
Linking
Tracking Output
Merge/Split
Merge and Split
API Reference
tobac package
tobac
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C
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F
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G
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H
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L
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M
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N
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P
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R
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S
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T
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V
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W
A
add_cell_time() (in module tobac.tracking)
add_coordinates() (in module tobac.utils)
animation_mask_field() (in module tobac.plotting)
area_histogram() (in module tobac.analysis)
C
calculate_area() (in module tobac.analysis)
calculate_areas_2Dlatlon() (in module tobac.analysis)
calculate_cog() (in module tobac.centerofgravity)
calculate_cog_domain() (in module tobac.centerofgravity)
calculate_cog_untracked() (in module tobac.centerofgravity)
calculate_distance() (in module tobac.analysis)
calculate_nearestneighbordistance() (in module tobac.analysis)
calculate_overlap() (in module tobac.analysis)
calculate_velocity() (in module tobac.analysis)
calculate_velocity_individual() (in module tobac.analysis)
cell_statistics() (in module tobac.analysis)
cell_statistics_all() (in module tobac.analysis)
center_of_gravity() (in module tobac.centerofgravity)
cog_cell() (in module tobac.analysis)
column_mask_from2D() (in module tobac.utils)
combine_tobac_feats() (in module tobac.utils)
compress_all() (in module tobac.utils)
F
feature_detection_multithreshold() (in module tobac.feature_detection)
feature_detection_multithreshold_timestep() (in module tobac.feature_detection)
feature_detection_threshold() (in module tobac.feature_detection)
feature_position() (in module tobac.feature_detection)
fill_gaps() (in module tobac.tracking)
filter_min_distance() (in module tobac.feature_detection)
G
generate_single_feature() (in module tobac.testing)
get_bounding_box() (in module tobac.utils)
get_indices_of_labels_from_reg_prop_dict() (in module tobac.utils)
get_label_props_in_dict() (in module tobac.utils)
get_spacings() (in module tobac.utils)
H
haversine() (in module tobac.analysis)
histogram_cellwise() (in module tobac.analysis)
histogram_featurewise() (in module tobac.analysis)
L
lifetime_histogram() (in module tobac.analysis)
linking_trackpy() (in module tobac.tracking)
M
make_dataset_from_arr() (in module tobac.testing)
make_feature_blob() (in module tobac.testing)
make_map() (in module tobac.plotting)
make_sample_data_2D_3blobs() (in module tobac.testing)
make_sample_data_2D_3blobs_inv() (in module tobac.testing)
make_sample_data_3D_3blobs() (in module tobac.testing)
make_simple_sample_data_2D() (in module tobac.testing)
maketrack() (in module tobac.wrapper)
map_tracks() (in module tobac.plotting)
mask_all_surface() (in module tobac.utils)
mask_cell() (in module tobac.utils)
mask_cell_columns() (in module tobac.utils)
mask_cell_surface() (in module tobac.utils)
mask_cube() (in module tobac.utils)
mask_cube_all() (in module tobac.utils)
mask_cube_cell() (in module tobac.utils)
mask_cube_features() (in module tobac.utils)
mask_cube_untracked() (in module tobac.utils)
mask_features() (in module tobac.utils)
mask_features_surface() (in module tobac.utils)
merge_split_MEST() (in module tobac.merge_split)
N
nearestneighbordistance_histogram() (in module tobac.analysis)
P
plot_histogram_cellwise() (in module tobac.plotting)
plot_histogram_featurewise() (in module tobac.plotting)
plot_lifetime_histogram() (in module tobac.plotting)
plot_lifetime_histogram_bar() (in module tobac.plotting)
plot_mask_cell_individual_3Dstatic() (in module tobac.plotting)
plot_mask_cell_individual_follow() (in module tobac.plotting)
plot_mask_cell_individual_static() (in module tobac.plotting)
plot_mask_cell_track_2D3Dstatic() (in module tobac.plotting)
plot_mask_cell_track_3Dstatic() (in module tobac.plotting)
plot_mask_cell_track_follow() (in module tobac.plotting)
plot_mask_cell_track_static() (in module tobac.plotting)
plot_mask_cell_track_static_timeseries() (in module tobac.plotting)
plot_tracks_mask_field() (in module tobac.plotting)
plot_tracks_mask_field_loop() (in module tobac.plotting)
R
remove_parents() (in module tobac.feature_detection)
S
segmentation() (in module tobac.segmentation)
segmentation_2D() (in module tobac.segmentation)
segmentation_3D() (in module tobac.segmentation)
segmentation_timestep() (in module tobac.segmentation)
set_arr_2D_3D() (in module tobac.testing)
spectral_filtering() (in module tobac.utils)
standardize_track_dataset() (in module tobac.utils)
T
test_overlap() (in module tobac.feature_detection)
tobac (module)
tobac.analysis (module)
tobac.centerofgravity (module)
tobac.feature_detection (module)
tobac.merge_split (module)
tobac.plotting (module)
tobac.segmentation (module)
tobac.testing (module)
tobac.tracking (module)
tobac.utils (module)
tobac.wrapper (module)
tracking_wrapper() (in module tobac.wrapper)
V
velocity_histogram() (in module tobac.analysis)
W
watershedding_2D() (in module tobac.segmentation)
watershedding_3D() (in module tobac.segmentation)
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